Season One
- Things Change
- A Better Mousetrap
- Attack of the Mousers
- Meet Casey Jones
- Nano
- Darkness on the Edge of Town
- The Way of Invisibility
- Fallen Angel
- Garbageman
- Shredder Strikes, Part One
- Shredder Strikes, Part Two
- The Unconvincing Turtle Titan
- Notes From the Underground, Part One
- Notes From the Underground, Part Two
- Notes From the Underground, Part Three
- The King
- Shredder Strikes Back, Part One
- Shredder Strikes Back, Part Two
- Tales of Leo
- The Monster Hunter
- Return to New York, Part One
- Return to New York, Part Two
- Return to New York, Part Three
- Lone Raph and Cub
- The Search for Splinter, Part One
- The Search for Splinter, Part Two
Season Two
- Turtles in Space, Part One: The Fugitoid
- Turtles in Space, Part Two: The Trouble with the Triceratons
- Turtles in Space, Part Three: The Big House
- Turtles in Space, Part Four: The Arena
- Turtle in Space, Part Five: Triceraton Wars
- Secret Origins, Part One
- Secret Origins, Part Two
- Secret Origins, Part Three
- The Ultimate Ninja
- Reflections
- The Return of Nano
- What a Croc!
- Return to the Underground
- City at War, Part One
- City at War, Part Two
- City at War, Part Three
- Junklantis
- The Golden Puck
- Rogue in the House, Part One
- Rogue in the House, Part Two
- April's Artifact
- Return of the Justice Force
- The Big Brawl, Part One
- The Big Brawl, Part Two
- The Big Brawl, Part Three
- The Big Brawl, Part Four
Season Three
- Space Invaders, Part One
- Space Invaders, Part Two
- Space Invaders, Part Three
- Worlds Collide, Part One
- Worlds Collide, Part Two
- Worlds Collide, Part Three
- Touch and Go
- Hunted
- H.A.T.E.
- Nobody's Fool
- New Blood
- The Lesson
- The Christmas Aliens
- The Darkness Within
- Mission of Gravity
- The Entity Below
- Time Travails
- Hun on the Run
- Reality Check
- Across the Universe
- Same As It Never Was
- The Real World, Part One
- The Real World, Part Two
- Bishop's Gambit
- Exodus, Part One
- Exodus, Part Two
Season Four
- Cousin Sid
- The People's Choice
- Sons of the Silent Age
- Dragon's Brew
- I, Monster
- Grudge Match
- A Wing and Prayer
- Bad Day
- Aliens Among Us
- Dragons Rising
- Still Nobody
- All Hallows Thieves
- Samurai Tourist
- The Ancient One
- Scion of the Shredder
- Prodigal Son
- Outbreak
- Trouble with Augie
- Insane in the Membrane
- Return of Savanti, Part One
- Return of Savanti, Part Two
- Tale of Master Yoshi
- Adventures in Turtle Sitting
- Good Genes, Part One
- Good Genes, Part Two
- Ninja Tribunal
Season Five (Lost Episodes)
- Lap of the Gods
- Demons and Dragons
- More Worlds Than One
- Beginning of the End
- Membership Drive
- New World Order, Part One
- New World Order, Part Two
- Fathers and Sons
- Past and Present
- Enter the Dragons, Part One
- Enter the Dragons, Part Two
Season Six (Fast Forward)
- Future Shellshock
- Obsolete
- Home Invasion
- Headlock Prime
- Playtime's Over
- Bishop to Knight
- Night of Sh'Okanabo
- Clash of the Turtle Titans
- Fly Me to the Moon
- Invasion of the Bodyjacker!
- The Freaks Come Out at Night
- Bad Blood
- The Journal
- The Gaminator
- Graduation Day: Class of 2105
- Timing is Everything
- Enter the Jammerhead
- Milk Run
- The Fall of Darius Dun
- Turtle X-Tinction
- Race For Glory
- Head of State
- DNA is Thicker Than Water
- The Cosmic Completist
- The Day of Awakening
- Zixxth Sense
Season Seven (Back to the Sewers)
- Tempus Fugit
- Karate Schooled
- Something Wicked
- The Engagement Ring
- Hacking Stockman
- Incredible Shrinking Serling
- Identity Crisis
- Web Wranglers
- SuperQuest
- Virtual Reality Check
- City Under Siege
- Super Power Struggle
- Wedding Bells and Bytes
- Mayhem from Mutant Island
Mayhem from Mutant Island Shorts
- What Lurks Beneath
- Terror Unleashed
- Trouble Runs Rampant
- Showdown in the Subterrane
- Attack of the Purple Dragons
- Face-Off with the Foot
- Rivals Take Arms
- Dread Returns
- In Pursuit of Danger
- The Scourge Revealed
- Rendezvous with Evil
- Stockman Strikes
- Fate of the Deranged Dinos
Movie
- Turtle Forever
DVD Releases
- Attack of the Mousers (Season One, Episodes One, Two, and Three)
- Meet Casey Jones (Season One, Episodes Four, Five, and Six)
- The Way of Invisibility (Season One, Episodes Seven, Eight, and Nine)
- The Shredder Strikes (Season One, Episodes Ten, Eleven, and Twelve)
- Box Set 1 (DVD Sets 1-4)
- Notes from the Underground (Season One, Episodes Thirteen, Fourteen, and Fifteen)
- The Shredder Strikes Back (Season One, Episodes Sixteen, Seventeen, Eighteen, and Nineteen)
- Return to New York (Season One, Episodes Twenty, Twenty-One, Twenty-Two, and Twenty-Three)
- The Search for Splinter (Season One, Episodes Twenty-Four, Twenty-Five, and Twenty Six)
- Turtles in Space (Season Two, Episodes One, Two, Three, and Four)
- Secret Origins (Season Two, Episodes Five, Six, Seven, and Eight)
- The Ultimate Ninja (Season Two, Episodes Nine, Ten, Eleven, and Eighteen)
- Crock Attack! (Season Two, Episodes Twelve, Thirteen, Seventeen, Twenty-One, and Twenty-Two)
- Michelangelo's Christmas Rescue (Season Three, Episode Thirteen and Season One, Episodes One, Five, and Ten)
- The Battle Nexus (Season Two, Episodes Twenty-Three, Twenty-Four, Twenty-Five, and Twenty-Six)
- City at War (Season Two, Episodes Fourteen, Fifteen, Sixteen, Nineteen, and Twenty)
- Ways of the Warrior: Alien Invasion (Season Three, Episodes One, Two, Three, Eight, and Twelve)
- Ways of the Warrior: Worlds Collide (Season Three, Episodes Four, Five, Six, Seven, and Eleven)
- Ways of the Warrior: Return of the Ultimate Ninja (Season Three, Episodes Nineteen, Twenty, Twenty-One, and Twenty-Three)
- Ways of the Warrior: Shredder's Final Countdown (Season Three, Episodes Twenty-Five and Twenty-Six; Season Four, Episodes One, Four, and Eight)
- Mutants and Monsters (Season Three, Episodes Fourteen, Sixteen, and Twenty-Four; Season Four, Episodes Five and Twelve)
- Turtles Against H.A.T.E. (Season Three, Episodes Nine, Fifteen, Seventeen; Season Four, Episodes Two and Three)
- Hun on the Run (Season Three, Episodes Ten and Eighteen; Season Four, Episodes Six, Seven, Nine, and Ten)
- Season Four: Fourteen Episodes (Disc One: Season Four, Episodes Eleven, Thirteen, Fourteen, Fifteen, Sixteen, Seventeen, Eighteen, and Nineteen; Disc Two: Season Four, Episodes Twenty, Twenty-One, Twenty-Two, Twenty-Three, Twenty-Four, and Twenty-Five)
- TMNT Fast Forward: Future Shellshock! (Disc One: Season Six, Episodes One, Two, Three, Four, Five, Six, and Seven; Disc Two: Season Six, Episodes Eight, Nine, Ten, Eleven, Twelve, and Thirteen)
- TMNT (2003) Season One, Part One (Disc One: Season One, Episodes One, Two, Three, Four, Five, and Six; Disc Two, Season One, Episodes Seven, Eight, Nine, Ten, Eleven, and Twelve)
- TMNT Fast Forward: The Day of Awakening (Disc One: Season Six, Episodes Fourteen, Fifteen, Sixteen, Seventeen, Eighteen, Nineteen, and Twenty; Disc Two: Season Six, Episodes Twenty-One, Twenty-Two, Twenty-Three, Twenty-Four, Twenty-Five, and Twenty-Six)
- TMNT (2003) Season One, Part Two (Disc One: Season One, Episodes Thirteen, Fourteen, Fifteen, Sixteen, Seventeen, Eighteen, and Nineteen; Disc TwoL Season One, Episodes Twenty, Twenty-One, Twenty-Two, Twenty-Three, Twenty-Four, Twenty-Five, and Twenty-Six)
- TMNT (2003) Season Two, Part One (Disc One: Season Two, Episodes One, Two, Three, Four, Five, and Six; Disc Two: Season Two, Episodes Seven, Eight, Nine, Ten, Eleven, and Twelve)
- Ninja Tribunal (Disc One: Season Four, Episode Twenty-Six; Season Five, Episodes One, Two, Three, Four, Five, and Seven; Disc Two: Season Five, Episodes Eight, Nine, Ten, Eleven, Twelve, and Thirteen)
- TMNT (2003) Season Two, Part Two (Disc One: Season Two, Episodes Thirteen, Fourteen, Fifteen, Sixteen, Seventeen, Eighteen, and Nineteen; Disc Two: Season Two, Episodes Twenty, Twenty-One, Twenty-Two, Twenty-Three, Twenty-Four, Twenty-Five, and Twenty-Six)